[Depreciated and replaced by V3] SUPERSEDED HISTORICAL RECORD — Fold Protein Sequence-Only Development Lineage
Abstract
[Depreciated and replaced by V3] The application-specific clean rebuild has not yet been published; its authoritative theoretical boundary is now the governing V3 branch: From Fold to Life: An Exact, Zero-Parameter and Machine-Closed Foundational Reconstruction of Biology and Life Sciences from Smithian Fold Theory. The V3 source platform is https://github.com/MettaMazza/ernos-labs-sft-platform. The original DOI, concept DOI, version number and files are preserved for transparent historical provenance; this record must not be presented or cited as current V3 work. This lineage is superseded and is preserved only for historical development transparency. The authoritative current Protein paper is From One Self-Proven Theorem to Blind Protein Structure. The chronological versions and evidence files in this concept preserve forcing audits, registries, seals, evaluation receipts, selected-state records and generated structures from construction of the sequence-only engine. These are provenance artifacts, not independent final claims or agent-owned findings. The current authoritative work reports a sealed blind prediction of the complete 76-residue ubiquitin backbone at 0.9891211351 TM-score, 0.2608575408 Angstrom C-alpha dRMSD and 0.3261459535 Angstrom Kabsch C-alpha RMSD. Material Architecture V1 restores 576 exact states at every residue, executes 43,776 raw state trials and seals its output before experimental comparison with zero runtime target accesses, fitted weights or trained parameters. Begin with the authoritative paper: 10.5281/zenodo.21482128. Author and publication authority: Maria Smith, Ernos Labs.
Fields of Study & Subjects
Protein Structure and Dynamics
Scientific Computing and Data Management
Genomics and Phylogenetic Studies
Publication details
- Journal / source
- Zenodo (CERN European Organization for Nuclear Research)
- Publication date
- 22 July 2026
- Language
- EN