Representation Transitions Reveal Predictive Structure in Complex Systems: A Trajectory-Level Reconstruction in a Critical System — Manuscript, Code, and Data

Full release package for "Representation Transitions Reveal PredictiveStructure in Complex Systems: A Trajectory-Level Reconstruction in aCritical System" (Jiaqi Pan, Independent Researcher), submitted toPLOS Complex Systems (Manuscript Number PCSY-D-26-00116). This version adds the manuscript itself (PDF and LaTeX source,Supplementary Material, and their figures) to the code and dataalready archived under this concept DOI. It supersedes the prior,code-only version (10.5281/zenodo.22047165) as the more completeartifact, which remains separately citable for anyone who specificallyneeds the code-only release. Contents:- paper/ — manuscript, Supplementary Material, references, figures (CC BY 4.0)- code/ — 33 analysis/simulation scripts (flat directory; see EXTENSION_MAP.md), MIT licensed- code/cache/ — raw trajectory data and processed results (63 files, ~28MB), CC BY 4.0 licensed- figures/ — standalone copies of all manuscript figures, including 300dpi submission-ready TIFF versions- parameters/simulation_config.json — all simulation parameters, machine-readable- environment/requirements.txt License note: this is a mixed-license record, declared as such inZenodo's own license field (not forced to a single choice). Paper,Supplementary Material, and their figures (paper/): CC BY 4.0. Code(code/, environment/, parameters/, top-level figures/): MIT. Data(code/cache/): CC BY 4.0. See LICENSE-CODE and LICENSE-PAPER in thearchive for the full, separately stated terms of each. Associated publication: submitted to PLOS Complex Systems, ManuscriptNumber PCSY-D-26-00116 (status: under editorial review at the time ofthis deposit). A full citation will be added once a decision isreached.