CZI file examples

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Authors: Nicolas Chiaruttini
Cited by: 0

Abstract

A set of public CZI files. These can be used for testing CZI readers. - Demo LISH 4x8 15pct 647.czi: A cleared mouse brain acquired with a Zeiss LightSheet Z1 with 32 tiles. Courtesy of the Carl Petersen lab LSENS (https://www.epfl.ch/labs/lsens). Sampled prepared by Yanqi Liu an imaged by Olivier Burri. - test_gray.czi: a synthetically generated CZI file without metadata, made by Sebastian Rhode - Image_1_2023_08_18__14_32_31_964.czi: an example multi-part CZI file, containing only camera noise - a xt scan, xz scan, xzt scan - a set of multi angle, multi illumination, mutli tile acquisition, taken on the LightSheet Z1 microscope of the PTBIOP by Lorenzo Talà - a Hela Kyoto cell division imaged with the Lattice Light Sheet 7, 3 channels (tubulin-eGFP, Histone-mCherry, Mitotracker DeepRed), , 60 timepoints. Raw data (cropped from a bigger dataset) + max projection.

Fields of Study & Subjects

Advanced Electron Microscopy Techniques and Applications Cell Image Analysis Techniques Advanced Fluorescence Microscopy Techniques

Publication details

Journal / source
Zenodo (CERN European Organization for Nuclear Research)
Publication date
16 March 2026
Language
EN
Document type
Dataset