orphan genes GO enrichment

Recherche Data Gouv France 2026 Dataset Open access

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Authors: Arthur Péré, Étienne Danchin
DOI: 10.57745/z2uosp
Cited by: 0

Abstract

With the interproscan, we used GOfuncR (v1.10.0, with R v4.0.5) to do an GO enrichisment on all the orphean genes, we also did it with only multicopy and singlecopy genes. Then we separete them in two groups: all the genes and only the expressed one. We also do the analysis with the refine method of GOfuncR. The tree of GO was done with this version https://release.geneontology.org/2025-03-16/ontology/go-basic.obo and complied to be used in GOfuncR with https://github.com/sgrote/OboToTerm

Fields of Study & Subjects

Genomics and Phylogenetic Studies Bioinformatics and Genomic Networks Chromosomal and Genetic Variations

Publication details

Journal / source
Recherche Data Gouv France
Publication date
1 January 2026
Language
EN
Document type
Dataset