Spatial transcriptomic data of the prefrontal cortex from 8 piglets

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Authors: Cui Shengdi
Cited by: 0

Abstract

This dataset is derived from the prefrontal cortex tissue of 8 8-week-old piglets, representing a cross-sectional sample of a single developmental time point. The spatial transcriptome data was obtained through the 10x Genomics Visium platform, with tissue slice thickness of 10 μ m, and annotated at cortical levels (especially III-V layers) with H&E staining assistance. The platform provides capture spots with a diameter of 55 μ m and a spacing of 100 μ m. Each spot can capture mRNA from approximately 1-10 cells, and all sequencing reads have precise two-dimensional (x, y) spatial coordinates that can align with tissue images to achieve spatial localization of gene expression. Therefore, this dataset provides a high-resolution gene expression spatial map at the organizational micro scale, but does not have single-cell or subcellular level resolution, nor does it contain temporal dynamic information.

Fields of Study & Subjects

Single-cell and spatial transcriptomics Genomics and Chromatin Dynamics Gene expression and cancer classification

Publication details

Journal / source
ScienceDB
Publication date
2 February 2026
Language
ZH
Document type
Dataset