A Versatile Platform for Sequential Glyco-, Phospho-, and Proteomics with Multi-PTMs Integration

This dataset accompanies the manuscript “A Versatile Platform for Sequential Glyco-, Phospho- and Proteomics with Multi-PTMs Integration” (Nature Communications, in review). Contents: (i) Excel/CSV source data for Figs. 1–6 and Supplementary Figs. S1–S22 ; (ii) processed LC–MS/MS tables at PSM/peptide/protein/site levels (FDR ≤ 1%); (iii) differential-analysis outputs and pathway enrichment results. The mass spectrometry proteomics data generated in this study have been deposited to the ProteomeXchange Consortium via the iProX partner repository with the dataset identifier PXD059701 and IPX0009561000.