Supplementary Data for Hao et al. (2025) "Imagin: an integrase-like gene conserved across malacostracan crustaceans derived from a Ginger1 DNA transposon"

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Authors: Satoshi Kawato, Liyuan Hao, Hidehiro Kondo, Reiko Nozaki, Miho Furukawa, Ikuo Hırono
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Abstract

Supplementary_Data_S1_AlphaFold_Models.zip: Supplementary Data S1- AlphaFold2 protein structure models of Imagin proteins.Supplementary_Data_S2_Miniprot_Raw.zip: Supplementary Data S2 - Raw Miniprot output files containing Imagin ortholog genomic alignments.Supplementary_Data_S3_CDS_Alignments_dNdS.zip: Supplementary Data S3: CDS alignments and HyPhy output files for dN/dS analysis.Supplementary_Data_S4_Imagin_phylogeny.zip: Supplementary Data S4 - Multiple sequence alignments and phylogenetic tree files for Imagin orthologs.Supplementary_Data_S5_Augustus_Raw.zip: Supplementary Data S5 - Raw Augustus output files containing Imagin predictions of isopods.Supplementary_Data_S6_DDE_phylogeny.zip: Supplementary Data S6 - Multiple sequence alignments and phylogenetic tree files for DDE integrases and Ginger1 elements.Supplementary_Data_S7_Bioinformatic_methods.md, Supplementary_Data_S7_Bioinformatic_methods.pdf: Supplementary Data S7 - Bioinformatic scripts used in this study.

Fields of Study & Subjects

Chromosomal and Genetic Variations Crustacean biology and ecology Genomics and Phylogenetic Studies

Publication details

Journal / source
Figshare
Publication date
1 January 2026