A total of 17,023 non-redundant MAGs from the gut microbiota of Caprinae animals

From a total of 779 gut metagenomic samples derived from Caprinae animals, we reconstructed 63,126 metagenome-assembled genomes (MAGs). Following stringent quality filtering (completeness ≥50%, contamination ≤10%) and dereplication at 99% average nucleotide identity (ANI), we curated a high-confidence dataset of 17,023 non-redundant MAGs, comprising 13,359 medium-quality MAGs (78.48%) and 3,664 high-quality MAGs (21.52%).