Additional file 1 of Sequence-based genome-wide association study reveals genetic and metabolic mechanisms underlying feed efficiency-related traits in beef cattle

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Authors: Leonardo Machestropa Arikawa, Lucio F. M. Mota, Larissa Fernanda Simielli Fonseca, Gerardo Alves Fernandes Júnior, Bruna Maria Salatta, Gabriela Bonfá Frezarim, Patricia I. Schmidt, Sindy Liliana Caivio Nasner, Júlia P. S. Valente, Amalia Mejia Pelaez, Roberta Carrilho Canesin, Josineudson A. V. Silva
+2 more Maria Eugênia Zerlotti Mercadante, Lucia G. Albuquerque
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Abstract

Additional file 1: Fig. S1. Quantile–quantileplots of expected versus observed −log10 values for the five evaluated traits:RFI, DMI, FC, FE, and RWG. The red dashed line represents the expected null distribution under no genetic association, and the shaded area indicates the 95% confidence interval. The genomic inflation factorshown in each panel indicates the absence of relevant genomic inflation. Table S1. SNP identification, chromosome, position, P-value, region, and gene identification for residual feed intake trait. Table S2. SNP identification, chromosome, position, P-value, region, and gene identification for dry matter intake trait. Table S3. SNP identification, chromosome, position, P-value, region, and gene identification for feed conversion trait. Table S4. SNP identification, chromosome, position, P-value, region, and gene identification for feed efficiency trait. Table S5. SNP identification, chromosome, position, P-value, region, and gene identification for residual weight gain trait. Table S6. Functional enrichment results for biological process GO terms of prioritized genes associated with feed efficiency-related traits in Nellore cattle. Table S7. Functional enrichment results for KEGG pathways of prioritized genes associated with feed efficiency-related traits in Nellore cattle.

Fields of Study & Subjects

Genetic and phenotypic traits in livestock Genetic Mapping and Diversity in Plants and Animals Ruminant Nutrition and Digestive Physiology

Publication details

Journal / source
Figshare
Publication date
1 January 2026