Supplementary Information for "Single-cell nanodroplet processing proteomics pipeline for analysis of human-derived microglia"

The enclosed .png files show single-cell isolations as described in the listed manuscript: https://doi.org/10.1101/2025.10.02.680067. Background images are provided for HMC3 and microglia isolation experiments (Background_hmc3.png and Background_microglia.png). Please review these backgrounds to differentiate cells from staining of the piezo dispensing capillary. Dashed, red, vertical lines indicate the isolation region within the piezo dispensing capillary. Selected single cells will appear to the left of this dashed line. The .png file names correspond to .raw file names provided via the MassIVE repository. Raw files are available at: Server: massive-ftp.ucsd.eduAccession: MSV000099294FTP link: ftp://massive-ftp.ucsd.edu/v11/MSV000099294/