Additional file 9 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

Supplementary Material 9. Figure S2. Alternate layout of phylogenetic trees of FoTeRs and related retrotransposons. (A) Maximum likelihood tree of FoTeR RT proteins (consensus full-length ORF translations from nine F. oxysporum strains) alongside 95 RT-like proteins from various retrotransposon families (Table S2), displayed in rectangular layout. (B) Maximum likelihood tree of restriction endonuclease-like (REL) domains from 20 representative retrotransposons, including FoTeRs, MoTeR1, and other site-specific elements, displayed in rectangular layout. In both trees, branch support was assessed using 10,000 ultrafast bootstrap replicates; branches with