Additional file 1 of Biogeography influences plant–microbe interactions and natural soil suppressiveness to black root rot disease of tobacco

Additional file 1: Fig. S1. Performance of tobacco after 3 weeks of growth in soils from Savoie and Switzerland, in the presence or absence of added Thielaviopsis basicola. Fig. S2. Impact of Thielaviopsis basicola inoculation and soil status on the correlations between various metrics of tobacco performance at 3 weeks of growth in Savoie and Switzerland soils. Fig. S3. Physicochemistry of the eight soils used for the plant experiment. Fig. S4. Fungal indicator taxa for suppressiveness depending on geographic region and pathogen inoculation. Fig. S5. Prokaryotic indicator taxa for suppressiveness depending on geographic region and pathogen inoculation. Fig. S6. Correlation matrices between soil physicochemical characteristics and the average CSS-normalized read count of broad COG categories and COGs belonging to the Secondary metabolites biosynthesis, transport and catabolism COG category. Fig. S7. Heatmap of Cumulative Sum Scaling-transformed read count of COG belonging to the Q category. Fig. S8. Taxonomic distribution and abundance of MAGs based on soil and inoculation conditions, with abundance measured as the TPM sum of contigs within each MAG. Fig. S9. Heatmaps displaying MAG abundance in the metagenome and individual Q-category COG abundance within those MAGs. Fig. S10. Tree inferred with FastME 2.1.6.1 from GBDP distances calculated from genome sequences of 26 type strains closely related to the Pseudomonas MAG. Fig. S11. Map of the regions of Morens and Savoie where soils were collected.