Additional file 2 of Biogeography influences plant–microbe interactions and natural soil suppressiveness to black root rot disease of tobacco

Additional file 2: Table S1. PERMANOVA results for the soil metabolome, with two models. Table S2. PERMANOVA results for the ITS metabarcoding, with three models. Table S3. PERMANOVA results for the 16S metabarcoding, with all soils and three models and separate soils for which the effect of pathogen inoculation was significant. Table S4. Comparison of most abundant phyla in the metagenomes of suppressive and conducive soils. Table S5. Comparison of most abundant classes in the metagenomes of suppressive and conducive soil samples. Table S6. PERMANOVA results for the abundance of COGs in the metagenome. Table S7. Comparison of the abundance of COG main categories between soils and number of differentially abundant COGs within the categories. Table S8. Comparison of the abundance and differential abundance analysis of individual COGs belonging to the ‘Q’ main COG category. Table S9. Details on the bins reconstructed with the coassembled tobacco rhizosphere metagenomes. Table S10. AntiSMASH annotation for bins that are > 50% complete and < 10% contaminated. Table S11. Subject strains used for the comparison with the Pseudomonas bin 1 with dDDH values and G + C difference when compared to Bin 1. Table S12. PERMANOVA results for the metabolome of tobacco shoots. Table S13. Main physicochemical characteristics of Swiss and Savoie soils. Table S14. Quality control for the shotgun metagenome assembly and binning.