R scripts to analyze scRNAseq data from DiLisio et al, Nat Comms 2026

Here contain all the R scripts necessary to analyze the scRNA-seq data from IGRP-tetramer+ T cells from either 2.5HIP NP or HEL NP treated animals for the data. The raw data necessary can be found at GEO accession GSE299087. These scripts contain extra code that was used for analyses that may not have been included in this publication but are maintained for completeness. The processed .rds file "CD8_C" of the IGRP CD8 T cells has also been provided for ease of analysis. Treatments are identified by 'orig.ident'.