A genetically encoded reporter reveals coordinated interferon responses in neurons and non-neuronal cells in the brain

Abstract Interferons (IFNs) are canonical antiviral cytokines with emerging homeostatic functions across tissues, including in the brain. However, detecting IFN-responsive cells remains challenging, particularly in the immune-restricted brain environment, limiting our understanding of the full breadth of IFN signaling across diverse cell types. Here we developed a novel mouse reporter that detects IFN responses in the brain and peripheral tissues, including in neurons. This tool, IFN-brite, B right R eporter of Interferon s T imulated gene E xpression, has two copies of the fluorophore mGreenLantern downstream of the native Isg15 IFN response gene. We observed IFN responses across multiple cell lineages. Deletion of the Type I interferon receptor Ifnar1 largely abrogated these responses, including to IFNγ, suggesting that Type II signaling can trigger secondary Type I responses. We observed IFN-responsive cells including neurons in a model of ischemic stroke and during experience-dependent neural plasticity. Furthermore, we found that peripheral infection with Sars-CoV2 but not influenza A leads to IFN-responsive neurons in the brain, suggesting differential impacts of these two pathogens in the nervous system. These data define a broadly useful new tool for studying IFN responsive cells and provide evidence that diverse cell types including neurons can respond to IFNs.