Fluorescent nanodiamond phantoms for spatial resolution benchmarking in two- and three-photon microscopy

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Authors: Filip K. Janiak, Michael Forsthofer, Jakub Czubek, Sînziana Pop, Yangting Fu, Lucia L. Prieto-Godino, Hans‐Ulrich Fried, Małgorzata Szczerska, Tom Baden
Cited by: 0
References: 40

Abstract

Summary Reliable spatial-resolution benchmarking is essential for multiphoton microscopy, yet conventional fluorescent-bead samples are imperfect references for biological imaging. Their fluorescence and sample properties can vary with preparation, storage and excitation conditions, while the surrounding agarose does not reproduce the depth-dependent optical degradation encountered in tissue. Here, we evaluate fluorescent nanodiamond phantoms as a more robust alternative for two- and three-photon microscopy. Nanodiamonds provide well-defined point-spread-function measurements across different microscope configurations, can be repeatedly imaged over long periods using the same physical sample, and remain usable across a broad range of excitation powers. Crucially, their optically heterogeneous matrix produces progressive broadening of the measured PSF with imaging depth, capturing a defining feature of real biological imaging that conventional bead phantoms largely miss. Nanodiamond phantoms therefore provide a durable and experimentally forgiving reference for benchmarking not only nominal spatial resolution, but how that resolution is maintained as imaging conditions become more challenging.

Fields of Study & Subjects

Advanced Fluorescence Microscopy Techniques Diamond and Carbon-based Materials Research Nonlinear Optical Materials Studies

Publication details

Journal / source
bioRxiv (Cold Spring Harbor Laboratory)
Publication date
13 January 2026
Document type
Preprint