Developing potent and selective TBK1 molecular glue degraders for cancer immunotherapy

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Authors: John J. Caldwell, Patrick R.A. Zanon, Iona Ferguson, Stephen T. Hallett, Tencho Tenev, Natalia-Serrano Aparicio, Russell J.H. Wood, Shakil Khan, Sidonie Wicky John, Rebecca Wilson, Matthew T. Warren, P. Craig McAndrew
+14 more Martin Steger, Denise Winkler, Uli Ohmayer, Bjoern Schwalb, Bachuki Shashikadze, Yann‐Vaï Le Bihan, Andrea Scarpino, Konstantinos Mitsopoulos, Fiona Dziegiel, Agnieszka Konopacka, Rob L.M. Van Montfort, Pascal Meier, Henrik Daub, Zoran Ranković
Cited by: 2
References: 89

Abstract

Abstract Immune checkpoint blockade (ICB) has transformed cancer therapy across multiple tumour types, yet primary and acquired resistance remain major barriers to durable benefit. TANK-binding kinase 1 (TBK1) has emerged as an attractive target to enhance anti-tumour immunity, acting as a serine/threonine kinase that restrains immunogenic cell death and downstream immune activation. Here we report the discovery of a first-in-class TBK1 molecular glue degrader (MGD), CCT412020, identified through high-throughput proteomics screening of a next-generation molecular glue library. CCT412020 induces rapid, potent and selective TBK1 degradation across a panel of breast cancer cell lines. A cryo-EM structure of CCT412020 in complex with CRBN/ΔBPB-DDB1 and TBK1-homodimer reveals an unexpected binding mode that bypasses the canonical G-loop and instead engages an unconventional site at the TBK1 homodimer interface. Functionally, TBK1 loss via CCT412020 sensitises tumour cells to TNF- and interferon-driven responses and reduced viability across a broad range of cancer cell lines. Together, these findings establish CCT412020 as a mechanistically distinct TBK1 degrader and provide a framework for developing TBK1-targeted degraders as immunomodulatory anti-cancer agents to overcome ICB resistance.

Fields of Study & Subjects

Cancer Immunotherapy and Biomarkers interferon and immune responses Protein Degradation and Inhibitors

Publication details

Journal / source
bioRxiv (Cold Spring Harbor Laboratory)
Publisher
openRxiv
Publication date
2 February 2026
Document type
Preprint