Parsing Neurometabolic Signatures of Multiple Sclerosis with MRSI and cPCA

ABSTRACT Magnetic Resonance Spectroscopy Imaging (MRSI) offers spatially-resolved, neurometabolic information, acquired non-invasively at whole-brain scales from human subjects. Analysis of MRSI however, is extremely challenging. The metabolic information is highly convolved, and sparsely distributed across millions of spatial-spectral datapoints, allowing for little direct human interpretation. Conversely, the overall low signal-to-noise with high-intensity artifacts can confound unsupervised machine learning approaches. These technical barriers have left much of the potential of MRSI unrealized. We acquired MRSI data from 4 human subjects with a diagnosis of multiple sclerosis (MS), incorporating experimental design into an informed machine learning approach. MRSI acquisitions were registered to anatomical MRI to label 105k spectra from brain tissue and 162 spectra from white matter hyperintensities (WMHs), an imaging biomarker associated with MS lesions. Spectral labels were then used in contrastive principal component analysis (cPCA) to filter artifacts and background features in the MRSI data from lesion salient features and clustered into statistically significant states based on features that could be interpreted from the original data. Our approach renders MRSI data into testable representations of neurometabolism, enabling the method for fundamental and clinical research. Graphical Abstract Analysis workflow for neurometabolic profiling of MS lesions. MRSI and anatomical MRI is acquired and processed in parallel for spectral data and anatomical labels. Spectra are then labeled and separated into experimental vs background data for contrastive PCA. Spectra are clustered for similarity, further labeled, and projected onto a brain atlas for a neurometabolic view.