Reconstructing living materials as a computable design space with multi-agent reasoning

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Authors: Yewei Xiao, Xi Zeng, Zhaoxiang Yang, Junwei Gu, Yanhong Lu, Yujie Wang, Huilin Wen, Mingdong Chen, Zhipeng Huang, Junwei Hu, Jiaojiao Liu, Chengxiang Sha
+14 more Jinhui Xie, Hui Li, Xiang Zhu, Shenchi Zheng, Jing Zhang, Weijie Zong, Zehao He, Ying Xu, Xin Zhou, Fei Li, Hui Liu, Qiaoning He, Linlin Liu, Ziyi Yu
Cited by: 0
References: 33

Abstract

Abstract Artificial intelligence is increasingly used to accelerate scientific discovery, but most successful frameworks operate within well-defined molecular, protein or materials spaces. Living materials present a more formidable computational problem because functions emerge from context dependent coupling among cells, matrices, fabrication processes and evaluation conditions. Here we introduce LiveMat, a multi-agent reasoning framework that transforms unstructured literature into a computable design space for living materials. LiveMat standardizes 34,215 living material records, integrating 16,769 microorganism and 17,446 polymer entries into a knowledge graph linking living components, abiotic matrices, functional outputs, evaluation contexts and performance metrics. Benchmarking across five large language models shows that living material reasoning is limited mainly by cross-domain feature integration rather than coarse classification. LiveMat overcomes this limitation through constraint decomposition, provenance-aware extraction, consistency checking and expert-anchored ranking. In a prospective wound-healing task, it prioritizes a four-component design with state-of-the-art in vivo performance, establishing a scalable infrastructure for interpretable, evidence-grounded living material discovery.

Fields of Study & Subjects

Machine Learning in Materials Science Biomedical Text Mining and Ontologies biodegradable polymer synthesis and properties

Publication details

Journal / source
bioRxiv (Cold Spring Harbor Laboratory)
Publication date
16 February 2026
Language
EN
Document type
Preprint