An Advanced Mobile Laboratory to enable field-based microbial ecology and cell biology across scales

Read full text
Authors: Niko Leisch, Sophie Baars, Thomas Beavis, P Bertucci, Chandni Bhickta, Michael Bonadonna, Charlotte M. Brannon, Laia Burgues-Palau, Paulina Cherek, Fanny Chevalier, J Decelle, Manon Demulder
+40 more Gautam Dey, O Dudin, E Duke, BD Engel, Eliott Flaum, Serena Flori, Benoît Gallet, P Guichard, A Halavatyi, V Hamel, Marie R. Jacobovitz, Caroline Juéry, Marine Hélène Laporte, S Mattei, Felix Mikus, Karel Mocaer, Kevin Moog, Marine Olivetta, M Pavie, R Pepperkok, Annemarie Perez-Boerema, Laurine Planat, Manu Prakash, Euan William Pyle, Christopher Randolph Rhodes, Ines Romero-Brey, P Ronchi, Higor Vinícius Dias Rosa, A Rubio Ramos, Clémence Saint-Donat, Yannick Schwab, Hiral Shah, Anna M. Steyer, Angelika Svetlove, Gaëlle Toullec, F Vincent, Tina Wiegand, W Wietrzynski, Daniel P. Yee, Soraya M. Zwahlen
Cited by: 2
References: 112

Abstract

Microbial biodiversity is central to ecosystem function, yet mechanistic insights into the cell biology of environmental organisms remain limited. The underlying challenges are twofold: most microbes remain uncultivable, and a persistent gap exists between field sampling and laboratory analyses. Here, we introduce the Advanced Mobile Laboratory (AML), a field-deployable platform that integrates confocal microscopy, image-enabled cell sorting, and cryo-preparation for expansion and electron microscopy. This setup enables immediate, standardized processing and analysis of environmental communities directly at the sampling site. We demonstrate its capability using marine eukaryotic plankton, showing how the AML enables multiscale investigations, from live imaging of natural communities to enabling ultrastructural and single-cell omics analyses, while minimizing sample degradation and enabling on-site experimentation. By bringing high-end sample preparation and analytical capacity into the field, the AML enables studying life in its natural context to mechanistically understand life's diversity in the environment.

Fields of Study & Subjects

Micro and Nano Robotics Microbial Community Ecology and Physiology Advanced Electron Microscopy Techniques and Applications

Publication details

Journal / source
bioRxiv (Cold Spring Harbor Laboratory)
Publisher
openRxiv
Publication date
23 February 2026
Language
EN
Document type
Preprint