GenBio-PathFM: A State-of-the-Art Foundation Model for Histopathology

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Authors: Saarthak Kapse, Mehmet Aygün, Elijah Cole, Emma Lundberg, Le Song, Eric Xing
Cited by: 1
References: 10

Abstract

Abstract Recent advancements in histopathology foundation models (FMs) have largely been driven by scaling the training data, often utilizing massive proprietary datasets. However, the long-tailed distribution of morphological features in whole-slide images (WSIs) makes simple scaling inefficient, as common morphologies dominate the learning signal. We introduce GenBio-PathFM, a 1.1B-parameter FM that achieves state-of-the-art performance on public benchmarks while using a fraction of the training data required by current leading models. The efficiency of GenBio-PathFM is underpinned by two primary innovations: an automated data curation pipeline that prioritizes morphological diversity and a novel dual-stage learning strategy which we term JEDI ( JE PA + DI NO). Across the THUNDER, HEST, and PathoROB benchmarks, GenBio-PathFM demonstrates state-of-the-art accuracy and robustness. GenBio-PathFM is the strongest open-weight model to date and the only state-of-the-art model trained exclusively on public data.

Fields of Study & Subjects

AI in cancer detection Cell Image Analysis Techniques Digital Imaging for Blood Diseases

Publication details

Journal / source
bioRxiv (Cold Spring Harbor Laboratory)
Publisher
openRxiv
Publication date
20 March 2026
Document type
Preprint