The IBEX Knowledge-Base: A Community Resource Enabling Adoption and Development of Immunofluorescence Imaging Methods

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Authors: Ziv Rafael Yaniv, Ifeanyichukwu U. Anidi, Leanne Arakkal, Armando Arroyo-Mejías, Rebecca T. Beuschel, K. Borner, Colin J. Chu, Beatrice Clark, Menna Ruth Clatworthy, Jake Colautti, Fabian Coscia, Joshua D. Croteau
+50 more Saven Denha, Rose Dever, Walderez O. Dutra, Sonja Fritzsche, Spencer Fullam, Michael Y. Gerner, Anita Gola, Kenneth J. Gollob, Jonathan Matthew Hernandez, Jyh Liang Hor, Hiroshi Ichise, Zhixin Jing, Danny David Jonigk, Evelyn Kandov, wolfgang kastenmüller, Joshua F. E. Koenig, Rosa K Kortekaas, Aanandita A. Kothurkar, Alexandra Y. Kreins, Ian T. Lamborn, Yuri Lin, Kátia L.P. Morais, Aleksandra Lunich, Jean CS Luz, Ryan B. MacDonald, Chen Makranz, Vivien I. Maltez, John E McDonough, Ryan V. Moriarty, Juan M Ocampo-Godinez, Vitoria M Olyntho, Annette Oxenius, Kartika Padhan, Kirsten Remmert, Nathan Richoz, Edward C. Schrom, Wanjing Shang, Lihong Shi, Rochelle M. Shih, Emily E. Speranza, Salome Stierli, Sarah Amalia Teichmann, Tibor Z. Veres, Megan Vierhout, Brianna T. Wachter, Adam K. Wade‐Vallance, Margaret C. Williams, Nathan Sébastien Zangger, Ronald N. Germain, Andrea J. Radtke
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References: 58

Abstract

The iterative bleaching extends multiplexity (IBEX) Knowledge-Base is a central portal for researchers adopting IBEX and related 2D and 3D immunofluorescence imaging methods. The design of the Knowledge-Base is modeled after efforts in the open-source software community and includes three facets: a development platform (GitHub), static website, and service for data archiving. The Knowledge-Base facilitates the practice of open science throughout the research life cycle by providing validation data for recommended and non-recommended reagents, such as primary and secondary antibodies. In addition to reporting negative data, the Knowledge-Base empowers method adoption and evolution by providing a venue for sharing protocols, videos, datasets, software, and publications. A dedicated discussion forum fosters a sense of community among researchers while addressing questions not covered in published manuscripts. Together, scientists from around the world are advancing scientific discovery at a faster pace, reducing wasted time and effort, and instilling greater confidence in the resulting data.

Fields of Study & Subjects

Monoclonal and Polyclonal Antibodies Research Cell Image Analysis Techniques Advanced Biosensing Techniques and Applications

Publication details

Journal / source
eLife
Publication date
5 January 2026
Document type
Preprint