Quantifying Local Strain Field and Deformation in Active Contraction of Bladder Using a Pretrained Transformer Model: A Speckle-Free Approach

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Authors: Alireza Asadbeygi, Anne M. Robertson, Yasutaka Tobe, Zamani, Masoud, Sean D. Stocker, Paul N. Watton, Naoki Yoshimura, Simon C Watkins
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Abstract

Accurate quantification of local strain fields during bladder contraction is essential for understanding the biomechanics of bladder micturition, in both health and disease. Conventional digital image correlation (DIC) methods have been successfully applied to various biological tissues; however, this approach requires artificial speckling, which can alter both passive and active properties of the tissue. In this study, we introduce a speckle-free framework for quantifying local strain fields using a state-of-the-art, zero-shot transformer model, CoTracker3. We utilized a custom-designed, portable isotonic biaxial apparatus compatible with multiphoton microscopy (MPM) to demonstrate this approach, successfully tracking natural bladder lumen textures without artificial markers. Benchmark tests validated the method's high pixel accuracy and low strain errors. Our framework effectively captured heterogeneous deformation patterns, despite complex folding and buckling, which conventional DIC often fails to track. Application to in vitro active bladder contractions in four rat specimens (n=4) revealed statistically significant anisotropy (p

Fields of Study & Subjects

Optical measurement and interference techniques Cellular Mechanics and Interactions Advanced Fluorescence Microscopy Techniques

Publication details

Journal / source
arXiv (Cornell University)
Publication date
4 January 2026
Document type
Preprint